Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Apre_1320PFAM: Heptaprenyl diphosphate synthase component I; KEGG: pca:Pcar_0037 hypothetical protein. (177 aa)    
Predicted Functional Partners:
Apre_1321
PFAM: protein of unknown function DUF1312; KEGG: pca:Pcar_0036 hypothetical protein.
 
    0.984
Apre_1315
PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: pca:Pcar_1046 cell division protein FtsI.
 
     0.811
Apre_1319
TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; KEGG: glo:Glov_0523 DNA repair protein RadC; Belongs to the UPF0758 family.
       0.809
Apre_1316
Hypothetical protein; KEGG: bha:BH3029 cell-shape determining protein.
       0.795
Apre_1317
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.795
Apre_1318
PFAM: cell shape determining protein MreB/Mrl; KEGG: pca:Pcar_1049 rod shape-determining protein MreB.
       0.795
Apre_1313
Ribonuclease G and E-like protein; KEGG: bcy:Bcer98_3160 ribonuclease.
       0.785
rnfD
Electron transport complex, RnfABCDGE type, D subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.
 
     0.782
rnfC
Electron transport complex, RnfABCDGE type, C subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.
 
     0.780
Apre_1325
PFAM: FMN-binding domain protein; KEGG: pca:Pcar_0261 NADH:ubiquinone oxidoreductase, RnfG subunit-like.
 
     0.768
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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