STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1382PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sed:SeD_A4451 trap dicarboxylate transporter, DctQ subunit. (183 aa)    
Predicted Functional Partners:
Apre_1381
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ppr:PBPRB1728 putative permease large protein, C4-dicarboxylate transport system.
 
 
 0.981
Apre_1383
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bha:BH0701 C4-dicarboxylate transport system (C4-dicarboxylate-binding protein).
 
  
 0.971
Apre_1611
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: asu:Asuc_0368 TRAP dicarboxylate transporter, DctM subunit.
 
 
 0.920
Apre_1613
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: asu:Asuc_0366 TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.877
Apre_1384
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: bcu:BCAH820_0721 ribose operon repressor.
       0.741
Apre_1380
PFAM: PfkB domain protein; KEGG: sus:Acid_2122 ribokinase-like domain-containing protein.
       0.557
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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