STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1388TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; KEGG: vsa:VSAL_II0339 phosphatase. (267 aa)    
Predicted Functional Partners:
Apre_1387
PFAM: glutaredoxin; KEGG: cps:CPS_3634 hypothetical protein.
       0.777
Apre_1385
PFAM: 8-oxoguanine DNA glycosylase domain protein; HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; KEGG: similar to N-glycosylase/DNA lyase; K03660 N- glycosylase/DNA lyase.
       0.547
Apre_1386
TIGRFAM: sortase, SrtB family; PFAM: peptidase C60 sortase A and B; KEGG: bha:BH3294 hypothetical protein.
       0.545
Apre_1384
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: bcu:BCAH820_0721 ribose operon repressor.
 
    0.416
Apre_0055
Glycerate kinase; KEGG: ccv:CCV52592_0612 glycerate kinase 1; TIGRFAM: glycerate kinase; PFAM: glycerate kinase; Belongs to the glycerate kinase type-1 family.
 
     0.411
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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