STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1417PFAM: cobalt transport protein; KEGG: bha:BH0166 hypothetical protein. (264 aa)    
Predicted Functional Partners:
ecfA
ABC transporter related; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 0.999
ecfA-2
ABC transporter related; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 0.999
Apre_0997
Hypothetical protein; KEGG: ecn:Ecaj_0677 NADH dehydrogenase (quinone).
 
 
 0.944
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.931
Apre_0579
Putative membrane protein.
 
 
 
 0.920
Apre_0313
PFAM: protein of unknown function DUF1393.
 
 
 0.906
Apre_0391
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU11370 oligopeptide ABC transporter ATP- binding protein.
  
 
 0.875
Apre_0688
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spe:Spro_3154 ABC transporter-related protein.
  
 
 0.875
Apre_1420
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bce:BC3203 hypothetical protein.
       0.796
Apre_1414
Hypothetical protein.
       0.782
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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