STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1477TIGRFAM: MJ0042 family finger-like protein. (123 aa)    
Predicted Functional Partners:
Apre_1483
PFAM: guanine-specific ribonuclease N1 and T1; KEGG: cco:CCC13826_0239 S-layer-like domain-containing protein.
 
     0.806
cobB
Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
       0.796
Apre_1479
Hypothetical protein; KEGG: bba:Bd0861 pilus biogenesis protein and ABC- type transporter.
       0.782
Apre_1480
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_1078 ABC transporter-related protein.
       0.782
Apre_1481
Hypothetical protein; KEGG: bar:GBAA1373 GntR family transcriptional regulator.
       0.782
Apre_1482
Hypothetical protein.
       0.778
Apre_1476
PFAM: protein of unknown function DUF129; KEGG: pmy:Pmen_2899 magnesium transporter.
 
     0.580
Apre_0774
PFAM: protein of unknown function DUF214; KEGG: lpc:LPC_0234 hypothetical protein.
  
     0.507
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.