STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1485TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: bca:BCE_5330 sortase family protein. (291 aa)    
Predicted Functional Partners:
Apre_1484
TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: bcr:BCAH187_A1859 sortase family protein.
 
    
0.850
Apre_1486
TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: bca:BCE_1804 sortase family protein.
 
    
0.816
Apre_1487
PFAM: Cna B domain protein; KEGG: bca:BCE_0961 cell wall anchor domain-containing protein.
 
   
 0.800
Apre_1453
TIGRFAM: LPXTG-motif cell wall anchor domain protein; KEGG: myosin heavy chain; K10352 myosin heavy chain.
 
   
 0.752
Apre_1454
PFAM: Cna B domain protein; KEGG: AGAP002737-PA.
 
   
 0.623
Apre_0734
HIRAN; PFAM: HIRAN; KEGG: rce:RC1_1924 hypothetical protein.
  
     0.556
Apre_0733
KEGG: viral A-type inclusion protein.
 
     0.522
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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