Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Apre_1494PFAM: pseudouridine synthase; RNA-binding S4 domain protein; KEGG: bha:BH3273 16S pseudouridylate synthase; Belongs to the pseudouridine synthase RsuA family. (232 aa)    
Predicted Functional Partners:
Apre_0582
Exodeoxyribonuclease III Xth; KEGG: bsu:BSU40880 multifunctional DNA-repair enzyme; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.
  
    0.809
Apre_1495
PFAM: transcriptional regulator PadR family protein; KEGG: bcr:BCAH187_A0475 transcriptional regulator, PadR family.
       0.781
cmk
KEGG: bha:BH1634 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region.
  
  
 0.738
der
Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.732
Apre_1024
Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.686
Apre_1496
UvrD/REP helicase; ATP-dependent DNA helicase.
       0.662
Apre_1493
PFAM: sugar transferase; KEGG: bha:BH3716 galactosyltransferase.
       0.655
Apre_1497
PFAM: GCN5-related N-acetyltransferase; KEGG: acetyltransferase, GNAT family protein.
  
    0.649
Apre_0272
TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: sfu:Sfum_1843 small GTP-binding protein.
  
  
 0.517
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
 
 
   0.474
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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