STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1535PFAM: sodium/hydrogen exchanger; KEGG: sfu:Sfum_1529 sodium/hydrogen exchanger. (396 aa)    
Predicted Functional Partners:
Apre_1537
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bcb:BCB4264_A3487 alpha-amylase; Belongs to the glycosyl hydrolase 13 family.
  
  
 0.527
deoC-2
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
       0.512
Apre_1536
PFAM: ribonuclease H; KEGG: rnh-1.0; RNase H; K03469 ribonuclease HI.
       0.510
Apre_1539
PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: spl:Spea_0302 response regulator receiver modulated serine phosphatase.
       0.510
Apre_0108
TIGRFAM: calcium-translocating P-type ATPase, PMCA- type; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: E1-E2 ATPase family protein.
   
 
 0.440
Apre_1542
PFAM: protein of unknown function DUF871; KEGG: bcb:BCB4264_A0878 hypothetical protein.
 
     0.422
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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