STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1539PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: spl:Spea_0302 response regulator receiver modulated serine phosphatase. (363 aa)    
Predicted Functional Partners:
Apre_0007
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: bce:BC1002 anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.969
Apre_0008
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: bca:BCE_1085 serine-protein kinase RsbW.
 
 
 0.933
Apre_0009
RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; Sigma-70 region 4 type 2; sigma- 70 region 4 domain protein; KEGG: bha:BH0529 RNA polymerase sigma factor SigB.
 
 
 0.834
Apre_1536
PFAM: ribonuclease H; KEGG: rnh-1.0; RNase H; K03469 ribonuclease HI.
       0.790
deoC-2
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
       0.787
Apre_1537
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bcb:BCB4264_A3487 alpha-amylase; Belongs to the glycosyl hydrolase 13 family.
       0.782
Apre_0273
PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; KEGG: sfu:Sfum_0842 thiamine biosynthesis protein ThiH.
   
  
 0.708
Apre_1631
TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; KEGG: cha:CHAB381_1176 thiamine biosynthesis protein ThiH.
   
  
 0.708
Apre_1471
Putative signal transduction histidine kinase; KEGG: ppd:Ppro_2661 putative anti-sigma regulatory factor, serine/threonine protein kinase.
  
   
 0.633
Apre_1333
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: hypothetical protein.
 
    0.603
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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