Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Apre_1590PFAM: 2-keto-3-deoxygluconate permease; KEGG: sec:SC0161 2-keto-3-deoxygluconate permease. (312 aa)    
Predicted Functional Partners:
Apre_1599
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: bcz:pE33L466_0341 keto-hydroxyglutarate- aldolase/keto-deoxy-phosphogluconate aldolase.
  
  
 0.827
Apre_1591
PFAM: glycoside hydrolase family 3 domain protein; KEGG: mmw:Mmwyl1_3059 xylan 1,4-beta-xylosidase.
     
 0.692
Apre_1592
TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: hsm:HSM_0410 sugar (glycoside-pentoside- hexuronide) transporter.
 
     0.529
Apre_1593
TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: hsm:HSM_0410 sugar (glycoside-pentoside- hexuronide) transporter.
       0.454
Apre_1595
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_7509 xylose isomerase domain-containing protein.
  
    0.451
Apre_1598
PFAM: PfkB domain protein; KEGG: sus:Acid_2122 ribokinase-like domain-containing protein.
  
  
 0.446
Apre_1594
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: eca:ECA2140 putative oxidoreductase.
  
    0.439
Apre_1596
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rle:RL0824 putative oxidoreductase.
  
    0.439
Apre_1597
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: eli:ELI_13345 lipopolysaccharide biosynthesis protein.
  
    0.439
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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