STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1591PFAM: glycoside hydrolase family 3 domain protein; KEGG: mmw:Mmwyl1_3059 xylan 1,4-beta-xylosidase. (705 aa)    
Predicted Functional Partners:
Apre_0153
Beta-glucosidase; PFAM: glycoside hydrolase family 1; KEGG: bsu:BSU05840 hypothetical protein; Belongs to the glycosyl hydrolase 1 family.
    
 0.919
Apre_1584
PFAM: glycoside hydrolase family 1; KEGG: ent:Ent638_1307 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 1 family.
    
 0.919
Apre_0794
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
  
 
 0.904
Apre_1595
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_7509 xylose isomerase domain-containing protein.
 
  
 0.718
Apre_1590
PFAM: 2-keto-3-deoxygluconate permease; KEGG: sec:SC0161 2-keto-3-deoxygluconate permease.
       0.680
Apre_1543
PFAM: beta-lactamase; KEGG: eum:ECUMN_2751 D-lactyl ether N-acetylmuramic- 6-phosphate acid etherase; beta-lactamase family.
  
 0.634
Apre_1597
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: eli:ELI_13345 lipopolysaccharide biosynthesis protein.
 
     0.633
Apre_1594
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: eca:ECA2140 putative oxidoreductase.
 
     0.629
Apre_1596
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rle:RL0824 putative oxidoreductase.
 
     0.612
uxaC
PFAM: Glucuronate isomerase; KEGG: bsu:BSU12300 glucuronate isomerase.
 
     0.544
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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