STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1596PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rle:RL0824 putative oxidoreductase. (341 aa)    
Predicted Functional Partners:
Apre_1595
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_7509 xylose isomerase domain-containing protein.
 
  
 0.981
Apre_1594
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: eca:ECA2140 putative oxidoreductase.
 
     0.925
Apre_1597
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: eli:ELI_13345 lipopolysaccharide biosynthesis protein.
 
    
0.828
Apre_1598
PFAM: PfkB domain protein; KEGG: sus:Acid_2122 ribokinase-like domain-containing protein.
  
  
 0.795
Apre_1592
TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: hsm:HSM_0410 sugar (glycoside-pentoside- hexuronide) transporter.
       0.747
Apre_1593
TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: hsm:HSM_0410 sugar (glycoside-pentoside- hexuronide) transporter.
       0.747
Apre_1271
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bce:BC5273 UDP-bacillosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.695
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); t-RNA- binding domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: bar:GBAA0076 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.613
Apre_1591
PFAM: glycoside hydrolase family 3 domain protein; KEGG: mmw:Mmwyl1_3059 xylan 1,4-beta-xylosidase.
 
     0.612
Apre_1380
PFAM: PfkB domain protein; KEGG: sus:Acid_2122 ribokinase-like domain-containing protein.
  
  
 0.591
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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