STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1611TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: asu:Asuc_0368 TRAP dicarboxylate transporter, DctM subunit. (429 aa)    
Predicted Functional Partners:
Apre_1613
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: asu:Asuc_0366 TRAP dicarboxylate transporter, DctP subunit.
 
 
 0.995
Apre_1612
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: asu:Asuc_0367 tripartite ATP-independent periplasmic transporter DctQ.
 
 
 0.981
Apre_1382
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sed:SeD_A4451 trap dicarboxylate transporter, DctQ subunit.
 
 
 0.920
Apre_1383
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bha:BH0701 C4-dicarboxylate transport system (C4-dicarboxylate-binding protein).
 
  
 0.825
Apre_1614
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: bsu:BSU12330 hypothetical protein.
     
 0.762
Apre_1615
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: asu:Asuc_0372 GntR family transcriptional regulator.
  
    0.533
Apre_1608
PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: sus:Acid_4901 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 2 family.
       0.508
Apre_1609
TIGRFAM: alpha-1,2-mannosidase; PFAM: glycosyl hydrolase 92; KEGG: pat:Patl_0120 putative alpha-1,2-mannosidase.
       0.505
Apre_1610
Hypothetical protein.
       0.505
Apre_1606
PFAM: Chromate transporter; KEGG: gur:Gura_1288 chromate transporter.
       0.414
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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