STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1621RbsD or FucU transport; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (130 aa)    
Predicted Functional Partners:
Apre_1618
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bsu:BSU35960 ribose ABC transporter (ribose- binding protein).
 
  
 0.991
Apre_1619
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bsu:BSU35950 ribose ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.987
rbsK
PfkB domain protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 
 0.985
Apre_1620
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BSU35940 ribose ABC transporter ATP- binding protein.
 
  
 0.972
Apre_1623
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: vvy:VVA0123 transcriptional regulator.
  
  
 0.813
Apre_1380
PFAM: PfkB domain protein; KEGG: sus:Acid_2122 ribokinase-like domain-containing protein.
  
  
 0.714
Apre_1598
PFAM: PfkB domain protein; KEGG: sus:Acid_2122 ribokinase-like domain-containing protein.
  
  
 0.714
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
    0.582
Apre_0605
PFAM: carbon starvation protein CstA; KEGG: bar:GBAA1822 carbon starvation protein A, putative.
   
    0.414
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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