Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Apre_1627KEGG: pmu:PM1099 hypothetical protein. (81 aa)    
Predicted Functional Partners:
Apre_1626
PFAM: dihydrofolate reductase region; KEGG: fta:FTA_0239 dihydrofolate reductase type I.
       0.781
Apre_1259
PFAM: peptidoglycan hydrolase; SH3 type-5 domain protein.
  
     0.722
Apre_0897
KEGG: hypothetical protein.
  
     0.666
Apre_0013
PFAM: peptidoglycan hydrolase; KEGG: hypothetical protein.
  
     0.600
Apre_0091
Hypothetical protein; KEGG: bcr:BCAH187_C0151 S-layer domain ribonuclease.
  
     0.600
Apre_0324
Hypothetical protein; KEGG: AGAP002737-PA.
  
     0.598
Apre_1016
Hypothetical protein.
  
     0.578
Apre_1017
KEGG: hypothetical protein.
  
     0.562
Apre_0314
Hypothetical protein.
  
     0.548
Apre_0524
PFAM: metallophosphoesterase.
  
     0.529
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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