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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1636TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: lpc:LPC_2694 nitrogen fixation protein (Fe-S cluster formation) NifU. (139 aa)    
Predicted Functional Partners:
Apre_1637
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.998
Apre_0565
PFAM: aminotransferase class V; KEGG: bsu:BSU27510 hypothetical protein.
  
 0.995
Apre_0924
PFAM: aminotransferase class V; KEGG: bcy:Bcer98_3320 aminotransferase class V.
  
 0.995
Apre_1638
PFAM: SufBD protein; KEGG: bha:BH3470 hypothetical protein.
 
  
 0.989
Apre_1639
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bsu:BSU32670 hypothetical protein.
 
  
 0.989
Apre_1640
KEGG: bcr:BCAH187_A5123 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.986
Apre_0365
Cysteine desulfurase; PFAM: aminotransferase class V; KEGG: sat:SYN_01071 cysteine desulfurase / selenocysteine lyase.
 
 0.977
Apre_0361
TIGRFAM: selenium-dependent molybdenum hydroxylase system protein, YqeB family; KEGG: eum:ECUMN_3218 conserved hypothetical protein; putative NAD(P)-binding Rossman fold.
  
 
 0.940
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.940
Apre_0429
PFAM: phospholipase D/Transphosphatidylase; SMART: phospholipase D/Transphosphatidylase; KEGG: bcr:BCAH187_A1350 cardiolipin synthetase; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.
   
 
 0.824
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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