STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1649PFAM: peptidase M29 aminopeptidase II; KEGG: bsu:BSU14450 aminopeptidase. (410 aa)    
Predicted Functional Partners:
Apre_1648
TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: prw:PsycPRwf_2081 oligoendopeptidase F.
 
   
 0.708
Apre_1647
PFAM: formate/nitrite transporter; KEGG: bpt:Bpet5000 formate and nitrite transporters.
       0.537
Apre_1650
Response regulator receiver protein; PFAM: LytTr DNA-binding region; KEGG: bcr:BCAH187_A5380 response regulator, LytTR family.
       0.490
Apre_1651
KEGG: bcr:BCAH187_A5379 hypothetical protein.
       0.483
Apre_1643
PFAM: protein of unknown function DUF901; KEGG: bha:BH0114 hypothetical protein.
 
     0.413
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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