STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1659PFAM: Abortive infection protein; KEGG: bcb:BCB4264_A2388 CAAX amino protease family. (301 aa)    
Predicted Functional Partners:
Apre_1660
Hypothetical protein.
       0.782
Apre_0249
PFAM: SH3 type 3 domain protein; protein of unknown function DUF1058; SMART: SH3 domain protein; KEGG: bcy:Bcer98_1493 NLP/P60 protein.
  
   0.561
Apre_1661
KEGG: Hypothetical protein CBG09235.
       0.558
Apre_0787
PFAM: Mannosyl-glycoprotein endo-beta-N- acetylglucosamidase; SMART: Lysozyme subfamily 2; KEGG: bcy:Bcer98_3449 N-acetylmuramoyl-L-alanine amidase.
    
   0.543
Apre_1049
KEGG: ecf:ECH74115_1558 hypothetical protein.
 
  
 0.464
Apre_1307
PFAM: ABC-2 type transporter; KEGG: cff:CFF8240_0262 ABC-type multidrug transport system permease component.
  
  
 0.449
Apre_1308
Hypothetical protein; KEGG: bcb:BCB4264_A1805 ABC transporter, permease protein.
  
  
 0.449
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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