STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1673KEGG: dal:Dalk_1694 hypothetical protein. (305 aa)    
Predicted Functional Partners:
Apre_1669
KEGG: bcr:BCAH187_A2105 hypothetical protein.
 
     0.866
Apre_1256
Transcriptional regulator, XRE family; KEGG: abu:Abu_0659 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
  
 0.857
Apre_0509
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
  
 0.856
Apre_1672
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; short- chain dehydrogenase/reductase SDR; KEGG: bsu:BSU38860 UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
     
 0.843
Apre_1668
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcr:BCAH187_A2104 permease protein.
 
     0.807
Apre_1667
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcr:BCAH187_A2103 ABC transporter, permease protein.
 
     0.788
Apre_1671
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bcb:BCB4264_A4122 sugar ABC transporter, ATP- binding protein; Belongs to the ABC transporter superfamily.
       0.752
Apre_1670
Hypothetical protein.
       0.741
Apre_1271
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bce:BC5273 UDP-bacillosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.736
Apre_1674
PFAM: coagulation factor 5/8 type domain protein; KEGG: bcr:BCAH187_A2113 endo-alpha-N- acetylgalactosaminidase.
 
     0.610
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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