Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Apre_1674PFAM: coagulation factor 5/8 type domain protein; KEGG: bcr:BCAH187_A2113 endo-alpha-N- acetylgalactosaminidase. (1970 aa)    
Predicted Functional Partners:
Apre_1669
KEGG: bcr:BCAH187_A2105 hypothetical protein.
 
   
 0.847
Apre_0585
PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: cko:CKO_02227 hypothetical protein.
  
 
 0.773
Apre_0648
PFAM: type II secretion system protein; KEGG: mxa:MXAN_2512 general secretion pathway protein F.
  
  
 0.755
Apre_1668
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcr:BCAH187_A2104 permease protein.
 
     0.748
Apre_1667
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcr:BCAH187_A2103 ABC transporter, permease protein.
 
     0.724
Apre_1186
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: bsu:BSU25570 putative integral membrane protein.
  
  
 0.666
Apre_1610
Hypothetical protein.
 
     0.632
Apre_1673
KEGG: dal:Dalk_1694 hypothetical protein.
 
     0.610
Apre_0650
PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: gsu:GSU2043 type 4 prepilin-like proteins leader peptide processing enzyme.
  
  
 0.558
Apre_0934
KEGG: bsu:BSU25590 unspecific high-affinity DNA- binding protein; TIGRFAM: competence protein ComEA helix-hairpin- helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1.
  
  
 0.531
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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