STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1679PFAM: regulatory protein MarR; transcriptional regulator TrmB; Penicillinase repressor; SMART: regulatory protein MarR; KEGG: abu:Abu_0136 MarR family transcriptional regulator. (141 aa)    
Predicted Functional Partners:
Apre_1678
PFAM: Pirin domain protein; KEGG: lip:LI0289 pirin-related protein; Belongs to the pirin family.
 
   
 0.827
Apre_1677
PFAM: NADPH-dependent FMN reductase; KEGG: rme:Rmet_2021 NADPH-dependent FMN reductase.
       0.782
Apre_1680
Hypothetical protein.
       0.465
Apre_1681
TIGRFAM: oligopeptide transporter, OPT family; oligopeptide transporters, OPT superfamily; PFAM: Oligopeptide transporter OPT superfamily protein; KEGG: acp:A2cp1_0265 oligopeptide transporter, OPT family.
       0.465
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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