STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1701PFAM: RDD domain containing protein; KEGG: bsu:BSU29520 hypothetical protein. (162 aa)    
Predicted Functional Partners:
Apre_1702
KEGG: bsu:BSU29530 signal peptide peptidase; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49.
 
  
 0.955
Apre_0620
PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: bha:BH0073 hypothetical protein.
  
    0.654
Apre_1252
TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: bcb:BCB4264_A0474 YihY family protein; Belongs to the UPF0761 family.
 
     0.502
Apre_0163
KEGG: conserved hypothetical protein; K10401 kinesin family member 18/19.
  
    0.470
Apre_1703
KEGG: dal:Dalk_3712 hypothetical protein.
       0.463
Apre_1700
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
       0.443
Apre_1180
Hypothetical protein; KEGG: net:Neut_0709 oxidoreductase FAD/NAD(P)- binding subunit.
  
     0.403
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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