STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apre_1708PFAM: periplasmic binding protein; KEGG: ABC transporter substrate binding protein (iron). (392 aa)    
Predicted Functional Partners:
Apre_1709
PFAM: transport system permease protein; inner- membrane translocator; ABC-3 protein; KEGG: kpe:KPK_4066 ABC transporter, iron chelate uptake transporter (FeCT) family, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.998
Apre_1710
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcy:Bcer98_0361 ABC transporter-related protein.
 
 
 0.997
Apre_1707
KEGG: sat:SYN_00476 hypothetical protein.
       0.782
Apre_1704
PFAM: PP-loop domain protein; KEGG: sfu:Sfum_1060 PP-loop domain protein.
  
    0.616
Apre_1705
PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: sat:SYN_00474 phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit.
       0.614
Apre_1386
TIGRFAM: sortase, SrtB family; PFAM: peptidase C60 sortase A and B; KEGG: bha:BH3294 hypothetical protein.
  
  
 0.588
Apre_1706
KEGG: aba:Acid345_2031 protein of unknown function DUF111.
       0.583
Apre_0052
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_4650 binding-protein-dependent transport systems inner membrane component.
  
  
 0.569
Apre_1711
Hypothetical protein.
  
    0.558
Apre_1703
KEGG: dal:Dalk_3712 hypothetical protein.
 
     0.542
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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