rnpA protein (Anaerococcus prevotii DSM 20548)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rnpA

Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (116 aa)

Predicted Functional Partners:

Apre_1737

0.964

Apre_1736

0.962

rpmH

0.940

Apre_1735

0.927

ispH

0.870

rpsT

0.792

rho

0.789

rpsP

0.782

rplD

0.782

rex

0.772

Your Current Organism:

Anaerococcus prevotii DSM 20548

NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Apre_1735	Apre_1736	Apre_1735	Apre_1736	PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: sat:SYN_01015 single-strand nucleic acid- binding domain-containing protein.	PFAM: 60 kDa inner membrane insertion protein; KEGG: pat:Patl_4312 60 kDa inner membrane insertion protein.	0.947
Apre_1735	Apre_1737	Apre_1735	Apre_1737	PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: sat:SYN_01015 single-strand nucleic acid- binding domain-containing protein.	Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.	0.923
Apre_1735	rho	Apre_1735	Apre_0750	PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: sat:SYN_01015 single-strand nucleic acid- binding domain-containing protein.	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	0.690
Apre_1735	rnpA	Apre_1735	Apre_1738	PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: sat:SYN_01015 single-strand nucleic acid- binding domain-containing protein.	Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	0.927
Apre_1735	rpmH	Apre_1735	Apre_1739	PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: sat:SYN_01015 single-strand nucleic acid- binding domain-containing protein.	TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: bcb:BCB4264_A5615 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.681
Apre_1736	Apre_1735	Apre_1736	Apre_1735	PFAM: 60 kDa inner membrane insertion protein; KEGG: pat:Patl_4312 60 kDa inner membrane insertion protein.	PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: sat:SYN_01015 single-strand nucleic acid- binding domain-containing protein.	0.947
Apre_1736	Apre_1737	Apre_1736	Apre_1737	PFAM: 60 kDa inner membrane insertion protein; KEGG: pat:Patl_4312 60 kDa inner membrane insertion protein.	Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.	0.939
Apre_1736	ispH	Apre_1736	Apre_1019	PFAM: 60 kDa inner membrane insertion protein; KEGG: pat:Patl_4312 60 kDa inner membrane insertion protein.	Hydroxymethylbutenyl pyrophosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.	0.785
Apre_1736	rho	Apre_1736	Apre_0750	PFAM: 60 kDa inner membrane insertion protein; KEGG: pat:Patl_4312 60 kDa inner membrane insertion protein.	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	0.756
Apre_1736	rnpA	Apre_1736	Apre_1738	PFAM: 60 kDa inner membrane insertion protein; KEGG: pat:Patl_4312 60 kDa inner membrane insertion protein.	Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	0.962
Apre_1736	rplD	Apre_1736	Apre_1573	PFAM: 60 kDa inner membrane insertion protein; KEGG: pat:Patl_4312 60 kDa inner membrane insertion protein.	Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.	0.891
Apre_1736	rpmH	Apre_1736	Apre_1739	PFAM: 60 kDa inner membrane insertion protein; KEGG: pat:Patl_4312 60 kDa inner membrane insertion protein.	TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: bcb:BCB4264_A5615 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.918
Apre_1736	rpsP	Apre_1736	Apre_1303	PFAM: 60 kDa inner membrane insertion protein; KEGG: pat:Patl_4312 60 kDa inner membrane insertion protein.	TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: bcy:Bcer98_2496 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.878
Apre_1736	rpsT	Apre_1736	Apre_1184	PFAM: 60 kDa inner membrane insertion protein; KEGG: pat:Patl_4312 60 kDa inner membrane insertion protein.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.618
Apre_1737	Apre_1735	Apre_1737	Apre_1735	Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.	PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: sat:SYN_01015 single-strand nucleic acid- binding domain-containing protein.	0.923
Apre_1737	Apre_1736	Apre_1737	Apre_1736	Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.	PFAM: 60 kDa inner membrane insertion protein; KEGG: pat:Patl_4312 60 kDa inner membrane insertion protein.	0.939
Apre_1737	rho	Apre_1737	Apre_0750	Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	0.716
Apre_1737	rnpA	Apre_1737	Apre_1738	Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.	Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.	0.964
Apre_1737	rplD	Apre_1737	Apre_1573	Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.	Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel.	0.681
Apre_1737	rpmH	Apre_1737	Apre_1739	Protein of unknown function DUF37; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.	TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: bcb:BCB4264_A5615 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.	0.787

page 1 of 4

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About