Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpmHTIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: bcb:BCB4264_A5615 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (44 aa)    
Predicted Functional Partners:
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: dol:Dole_2056 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.976
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.974
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.974
rpmJ
TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: rpl36; 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.972
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.972
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: ppd:Ppro_1740 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.970
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: bcy:Bcer98_2496 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
   
 
 0.970
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
   
 
 0.967
rpmA
TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: bsu:BSU27940 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.967
rpmI
TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: dps:DP1426 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.967
Your Current Organism:
Anaerococcus prevotii DSM 20548
NCBI taxonomy Id: 525919
Other names: A. prevotii DSM 20548, Anaerococcus prevotii ATCC 9321, Anaerococcus prevotii CCUG 41932, Anaerococcus prevotii str. DSM 20548, Anaerococcus prevotii strain DSM 20548
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