SIQ06298.1 protein (Acidiphilium rubrum) - STRING interaction network

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Score

SIQ06298.1

Ribosome-associated protein. (140 aa)

Predicted Functional Partners:

rplU

0.989

rpmA

0.979

rpsP

0.978

rpsL

0.974

rpsG

0.972

rplD

0.968

rplM

0.967

rplQ

0.963

rplX

0.962

rplB

0.960

Your Current Organism:

Acidiphilium rubrum

NCBI taxonomy Id: 526
Other names: A. rubrum, ATCC 35905, Acidiphilum rubrum, strain OP

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SIQ06298.1	rplB	SAMN05421828_101130	SAMN05421828_102253	Ribosome-associated protein.	Large subunit ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.960
SIQ06298.1	rplD	SAMN05421828_101130	SAMN05421828_102255	Ribosome-associated protein.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.968
SIQ06298.1	rplM	SAMN05421828_101130	SAMN05421828_14111	Ribosome-associated protein.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.967
SIQ06298.1	rplQ	SAMN05421828_101130	SAMN05421828_102231	Ribosome-associated protein.	LSU ribosomal protein L17P.	0.963
SIQ06298.1	rplU	SAMN05421828_101130	SAMN05421828_10858	Ribosome-associated protein.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.989
SIQ06298.1	rplX	SAMN05421828_101130	SAMN05421828_102245	Ribosome-associated protein.	LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.962
SIQ06298.1	rpmA	SAMN05421828_101130	SAMN05421828_10857	Ribosome-associated protein.	Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.979
SIQ06298.1	rpsG	SAMN05421828_101130	SAMN05421828_102259	Ribosome-associated protein.	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.972
SIQ06298.1	rpsL	SAMN05421828_101130	SAMN05421828_102260	Ribosome-associated protein.	SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.974
SIQ06298.1	rpsP	SAMN05421828_101130	SAMN05421828_10424	Ribosome-associated protein.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.978
rplB	SIQ06298.1	SAMN05421828_102253	SAMN05421828_101130	Large subunit ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosome-associated protein.	0.960
rplB	rplD	SAMN05421828_102253	SAMN05421828_102255	Large subunit ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplB	rplM	SAMN05421828_102253	SAMN05421828_14111	Large subunit ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplB	rplQ	SAMN05421828_102253	SAMN05421828_102231	Large subunit ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	LSU ribosomal protein L17P.	0.996
rplB	rplU	SAMN05421828_102253	SAMN05421828_10858	Large subunit ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.993
rplB	rplX	SAMN05421828_102253	SAMN05421828_102245	Large subunit ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.999
rplB	rpmA	SAMN05421828_102253	SAMN05421828_10857	Large subunit ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.993
rplB	rpsG	SAMN05421828_102253	SAMN05421828_102259	Large subunit ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.998
rplB	rpsL	SAMN05421828_102253	SAMN05421828_102260	Large subunit ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.998
rplB	rpsP	SAMN05421828_102253	SAMN05421828_10424	Large subunit ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.993