STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ08240.1Phage shock protein A (PspA) family protein. (227 aa)    
Predicted Functional Partners:
SIQ14859.1
PAS domain S-box-containing protein.
    
 
 0.946
SIQ62793.1
Hypothetical protein.
    
 
 0.946
SIQ08270.1
Psp operon transcriptional activator.
 
   
 0.765
SIQ36553.1
Signal transduction histidine kinase.
    
 
 0.696
SIQ08188.1
Phage shock protein B.
       0.689
SIQ08212.1
Phage shock protein B.
       0.689
SIR27348.1
Signal transduction histidine kinase.
    
 
 0.655
SIR39408.1
Two-component system, chemotaxis family, CheB/CheR fusion protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
    
 
 0.655
SIR48393.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
    
 
 0.655
SIQ08160.1
Phage shock protein C (PspC) family protein.
       0.653
Your Current Organism:
Acidiphilium rubrum
NCBI taxonomy Id: 526
Other names: A. rubrum, ATCC 35905, Acidiphilum rubrum, strain OP
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