Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIQ17362.1 | SIQ17426.1 | SAMN05421828_10299 | SAMN05421828_102101 | Cobaltochelatase CobN subunit. | Mg-protoporphyrin IX methyltransferase. | 0.995 |
SIQ17362.1 | SIQ17496.1 | SAMN05421828_10299 | SAMN05421828_102103 | Cobaltochelatase CobN subunit. | Photosynthetic reaction center H subunit. | 0.957 |
SIQ17362.1 | SIQ17530.1 | SAMN05421828_10299 | SAMN05421828_102104 | Cobaltochelatase CobN subunit. | PH domain-containing protein. | 0.954 |
SIQ17362.1 | SIQ17562.1 | SAMN05421828_10299 | SAMN05421828_102105 | Cobaltochelatase CobN subunit. | Putative photosynthetic complex assembly protein. | 0.899 |
SIQ17362.1 | SIQ17599.1 | SAMN05421828_10299 | SAMN05421828_102106 | Cobaltochelatase CobN subunit. | Hypothetical protein. | 0.890 |
SIQ17362.1 | SIQ17666.1 | SAMN05421828_10299 | SAMN05421828_102108 | Cobaltochelatase CobN subunit. | Putative photosynthetic complex assembly protein 2. | 0.806 |
SIQ17362.1 | acsF | SAMN05421828_10299 | SAMN05421828_102107 | Cobaltochelatase CobN subunit. | Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family. | 0.958 |
SIQ17362.1 | bchB | SAMN05421828_10299 | SAMN05421828_10298 | Cobaltochelatase CobN subunit. | Ferredoxin protochlorophyllide reductase subunit B; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.955 |
SIQ17362.1 | bchF | SAMN05421828_10299 | SAMN05421828_10296 | Cobaltochelatase CobN subunit. | 3-vinyl bacteriochlorophyllide hydratase. | 0.974 |
SIQ17362.1 | bchN | SAMN05421828_10299 | SAMN05421828_10297 | Cobaltochelatase CobN subunit. | Ferredoxin protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.985 |
SIQ17426.1 | SIQ17362.1 | SAMN05421828_102101 | SAMN05421828_10299 | Mg-protoporphyrin IX methyltransferase. | Cobaltochelatase CobN subunit. | 0.995 |
SIQ17426.1 | SIQ17496.1 | SAMN05421828_102101 | SAMN05421828_102103 | Mg-protoporphyrin IX methyltransferase. | Photosynthetic reaction center H subunit. | 0.989 |
SIQ17426.1 | SIQ17530.1 | SAMN05421828_102101 | SAMN05421828_102104 | Mg-protoporphyrin IX methyltransferase. | PH domain-containing protein. | 0.989 |
SIQ17426.1 | SIQ17562.1 | SAMN05421828_102101 | SAMN05421828_102105 | Mg-protoporphyrin IX methyltransferase. | Putative photosynthetic complex assembly protein. | 0.969 |
SIQ17426.1 | SIQ17599.1 | SAMN05421828_102101 | SAMN05421828_102106 | Mg-protoporphyrin IX methyltransferase. | Hypothetical protein. | 0.894 |
SIQ17426.1 | SIQ17666.1 | SAMN05421828_102101 | SAMN05421828_102108 | Mg-protoporphyrin IX methyltransferase. | Putative photosynthetic complex assembly protein 2. | 0.806 |
SIQ17426.1 | acsF | SAMN05421828_102101 | SAMN05421828_102107 | Mg-protoporphyrin IX methyltransferase. | Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family. | 0.991 |
SIQ17426.1 | bchB | SAMN05421828_102101 | SAMN05421828_10298 | Mg-protoporphyrin IX methyltransferase. | Ferredoxin protochlorophyllide reductase subunit B; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.961 |
SIQ17426.1 | bchF | SAMN05421828_102101 | SAMN05421828_10296 | Mg-protoporphyrin IX methyltransferase. | 3-vinyl bacteriochlorophyllide hydratase. | 0.980 |
SIQ17426.1 | bchN | SAMN05421828_102101 | SAMN05421828_10297 | Mg-protoporphyrin IX methyltransferase. | Ferredoxin protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.981 |
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