STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ38408.1N-carbamoyl-L-amino-acid hydrolase. (415 aa)    
Predicted Functional Partners:
SIQ88986.1
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase.
  
  0.959
SIQ93343.1
Dihydropyrimidinase.
 
 
 0.936
SIQ63097.1
Dihydropyrimidinase.
 
 
 0.935
SIQ63195.1
Dihydropyrimidine dehydrogenase (NAD+) subunit PreA.
 
 0.932
SIQ63165.1
Glutamate synthase (NADPH/NADH) small chain.
 
 
  0.898
SIQ89160.1
Chitin deacetylase.
 
  
 0.886
SIQ78937.1
Dihydroorotase.
  
 
 0.866
SIR18682.1
Dihydroorotase.
  
 
 0.683
SIQ76736.1
Alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase.
  
 
  0.682
SIR41703.1
Alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase.
  
 
  0.682
Your Current Organism:
Acidiphilium rubrum
NCBI taxonomy Id: 526
Other names: A. rubrum, ATCC 35905, Acidiphilum rubrum, strain OP
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