STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR24317.1Ureidoglycolate lyase. (281 aa)    
Predicted Functional Partners:
SIQ78169.1
Regulator of RNase E activity RraA.
 
   
 0.859
SIQ42531.1
L-fucose dehydrogenase.
 
  0.767
SIQ38465.1
4-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.760
SIR24373.1
Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase.
  
 0.742
SIR04740.1
Fumarylpyruvate hydrolase.
  
  
 
0.699
SIR41751.1
FAD/FMN-containing dehydrogenase.
    
  0.686
SIR12266.1
2-keto-3-deoxy-L-fuconate dehydrogenase.
 
  0.658
leuC
3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
  
 
  0.648
SIQ16109.1
Maleylacetoacetate isomerase/maleylpyruvate isomerase.
   
 
 0.630
SIQ82468.1
Betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.612
Your Current Organism:
Acidiphilium rubrum
NCBI taxonomy Id: 526
Other names: A. rubrum, ATCC 35905, Acidiphilum rubrum, strain OP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.