STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR33289.1Type VI secretion system protein ImpJ. (443 aa)    
Predicted Functional Partners:
SIR33311.1
Type VI secretion system protein ImpK.
  
 0.996
SIR33698.1
Type VI secretion system protein ImpG.
 
 
 0.991
SIR33627.1
Type VI secretion system protein ImpB.
 
 
 0.986
SIR33358.1
Type VI secretion system protein ImpL.
 
 
 0.984
SIR33265.1
Type VI secretion system protein VasD.
 
  
 0.972
SIR33245.1
FHA domain protein.
  
 0.968
SIR33384.1
Type VI secretion system protein ImpM.
 
  
 0.965
SIR33412.1
Protein phosphatase/serine/threonine protein phosphatase Stp1.
 
 
 0.963
SIR33196.1
Type VI secretion system secreted protein VgrG.
  
 0.958
SIR33222.1
Hypothetical protein.
 
     0.945
Your Current Organism:
Acidiphilium rubrum
NCBI taxonomy Id: 526
Other names: A. rubrum, ATCC 35905, Acidiphilum rubrum, strain OP
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.