STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR39200.1Pilus assembly protein CpaE. (399 aa)    
Predicted Functional Partners:
SIR39152.1
Tight adherence protein B.
 
  
 0.986
SIR39219.1
Pilus assembly protein CpaB.
 
  
 0.985
SIR39123.1
Tight adherence protein C.
 
  
 0.978
SIR39175.1
Pilus assembly protein CpaF.
 
  
 0.970
SIQ71713.1
Flp pilus assembly protein TadB.
 
  
 0.944
SIQ71885.1
Pilus assembly protein CpaB.
 
  
 0.938
SIQ71680.1
Tight adherence protein C.
 
  
 0.909
SIQ71849.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.895
SIR08328.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.894
SIQ71748.1
Pilus assembly protein CpaF.
 
  
 0.875
Your Current Organism:
Acidiphilium rubrum
NCBI taxonomy Id: 526
Other names: A. rubrum, ATCC 35905, Acidiphilum rubrum, strain OP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.