STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR43601.1Tn3 transposase DDE domain-containing protein. (95 aa)    
Predicted Functional Partners:
SIR58283.1
Protein of unknown function.
 
     0.976
SIR45486.1
TniB protein.
  
     0.545
SIR55842.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.500
SIR48368.1
Putative transposase.
  
     0.451
SIR45466.1
Putative transposase.
  
     0.429
SIR43582.1
ATP-dependent exoDNAse (exonuclease V), alpha subunit, helicase superfamily I.
       0.414
Your Current Organism:
Acidiphilium rubrum
NCBI taxonomy Id: 526
Other names: A. rubrum, ATCC 35905, Acidiphilum rubrum, strain OP
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.