STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACZ07116.1PFAM: type II secretion system protein; KEGG: hdu:HD1125 pili/fimbriae biogenesis protein. (388 aa)    
Predicted Functional Partners:
ACZ07516.1
PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: noc:Noc_2895 type II secretion system protein E.
 
 
 0.993
ACZ07129.1
PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; KEGG: geo:Geob_3081 peptidase A24A domain protein.
 
  
 0.944
ACZ07123.1
PFAM: type II and III secretion system protein; KEGG: eta:ETA_07920 general secretion pathway protein D; Belongs to the bacterial secretin family.
 
  
 0.891
ACZ08681.1
KEGG: hypothetical protein.
  
  
 0.778
ACZ10507.1
Hypothetical protein.
  
  
 0.778
ACZ07118.1
PFAM: major facilitator superfamily MFS_1; KEGG: pzu:PHZ_c2267 permease of the major facilitator superfamily.
 
     0.637
ispF
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).
       0.633
ACZ08100.1
PFAM: SMF family protein; KEGG: ppd:Ppro_0529 DNA protecting protein DprA.
 
  
 0.614
ACZ09893.1
KEGG: nse:NSE_0416 putative competence protein F.
 
  
 0.608
ACZ07130.1
Hypothetical protein; KEGG: ftn:FTN_0415 type IV pili, pilus assembly protein.
 
   
 0.588
Your Current Organism:
Sebaldella termitidis
NCBI taxonomy Id: 526218
Other names: S. termitidis ATCC 33386, Sebaldella termitidis ATCC 33386, Sebaldella termitidis NCTC 11300, Sebaldella termitidis str. ATCC 33386, Sebaldella termitidis strain ATCC 33386
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.