STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACZ07283.1Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: sat:SYN_00574 cAMP-dependent transcriptional regulator. (206 aa)    
Predicted Functional Partners:
ACZ07282.1
KEGG: scl:sce1139 hypothetical protein.
 
     0.677
ACZ08700.1
KEGG: ecm:EcSMS35_4832 hypothetical protein.
 
     0.657
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.636
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.624
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.602
ACZ09788.1
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.596
ACZ07218.1
Hypothetical protein.
  
 
 0.535
ACZ07281.1
PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt3786 putative acetyltransferase.
     
 0.529
ACZ09590.1
Hydrolase or acyltransferase (alpha/beta hydrolase superfamily)-like protein; KEGG: ret:RHE_CH00113 putative hydrolase protein.
 
  
 0.509
ACZ10070.1
TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: xau:Xaut_2320 MIP family channel protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 0.430
Your Current Organism:
Sebaldella termitidis
NCBI taxonomy Id: 526218
Other names: S. termitidis ATCC 33386, Sebaldella termitidis ATCC 33386, Sebaldella termitidis NCTC 11300, Sebaldella termitidis str. ATCC 33386, Sebaldella termitidis strain ATCC 33386
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