Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACZ07461.1Coproporphyrinogen dehydrogenase; KEGG: ccv:CCV52592_0647 quinone-reactive Ni/Fe hydrogenase, large subunit; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB. (415 aa)    
Predicted Functional Partners:
ACZ07462.1
KEGG: cff:CFF8240_1764 flavodoxin family protein.
 
   
 0.859
ACZ07460.1
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: cju:C8J_1514 hypothetical protein.
     
 0.718
ACZ07458.1
PFAM: periplasmic binding protein; KEGG: ccv:CCV52592_0648 hemin-binding periplasmic protein HmuT.
     
 0.680
ACZ07459.1
Hypothetical protein; KEGG: GK23239 gene product from transcript GK23239- RA.
       0.636
rlmN
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
 
   
 0.630
ACZ07455.1
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: cff:CFF8240_1760 TonB-dependent heme receptor.
 
   
 0.628
ACZ07456.1
PFAM: transport system permease protein; ABC-3 protein; KEGG: ccv:CCV52592_0650 hemin transport system permease protein HmuU; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   
 0.612
ACZ07457.1
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cff:CFF8240_1762 ferrichrome transport ATP- binding protein FhuC.
     
 0.563
miaB
RNA modification enzyme, MiaB family; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
 
  
 0.554
ACZ07454.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: slo:Shew_2475 biopolymer transport protein ExbD/TolR.
     
 0.508
Your Current Organism:
Sebaldella termitidis
NCBI taxonomy Id: 526218
Other names: S. termitidis ATCC 33386, Sebaldella termitidis ATCC 33386, Sebaldella termitidis NCTC 11300, Sebaldella termitidis str. ATCC 33386, Sebaldella termitidis strain ATCC 33386
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