STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACZ07478.1KEGG: swd:Swoo_2851 hypothetical protein. (207 aa)    
Predicted Functional Partners:
ACZ10480.1
PFAM: Helix-turn-helix type 11 domain protein; regulatory protein DeoR; KEGG: hypothetical protein.
 
     0.523
ACZ07477.1
PFAM: protein of unknown function DUF328; KEGG: ftw:FTW_0267 hypothetical protein; Belongs to the UPF0246 family.
       0.456
ACZ09150.1
PFAM: Helix-turn-helix type 11 domain protein; regulatory protein DeoR; SMART: regulatory protein DeoR; KEGG: hch:HCH_00194 transcriptional regulator.
 
     0.432
ACZ10664.1
Transcriptional regulator, MerR family; PFAM: transcription activator effector binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: dps:DP0195 multidrug-efflux transporter gene transcriptional regulator.
 
     0.402
Your Current Organism:
Sebaldella termitidis
NCBI taxonomy Id: 526218
Other names: S. termitidis ATCC 33386, Sebaldella termitidis ATCC 33386, Sebaldella termitidis NCTC 11300, Sebaldella termitidis str. ATCC 33386, Sebaldella termitidis strain ATCC 33386
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.