STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACZ07957.1Hypothetical protein. (63 aa)    
Predicted Functional Partners:
ACZ07956.1
KEGG: ppd:Ppro_0098 hypothetical protein.
       0.757
ACZ07958.1
TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: ade:Adeh_2055 oligopeptidase F.
       0.737
ACZ07955.1
PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: predicted protein.
       0.721
ACZ07959.1
TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; KEGG: pmu:PM0896 glucose-specific PTS system component.
       0.556
ACZ07953.1
PFAM: histidine kinase HAMP region domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: histidine kinase A domain protein; ATP- binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: tdn:Suden_0316 histidine kinase.
       0.494
ACZ07954.1
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: sfu:Sfum_0707 two component transcriptional regulator, winged helix family.
       0.494
Your Current Organism:
Sebaldella termitidis
NCBI taxonomy Id: 526218
Other names: S. termitidis ATCC 33386, Sebaldella termitidis ATCC 33386, Sebaldella termitidis NCTC 11300, Sebaldella termitidis str. ATCC 33386, Sebaldella termitidis strain ATCC 33386
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