STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACZ08249.1PFAM: integrase family protein; KEGG: cha:CHAB381_1561 site-specific recombinase phage integrase family protein; Belongs to the 'phage' integrase family. (344 aa)    
Predicted Functional Partners:
ACZ08251.1
PFAM: protein of unknown function DUF955; KEGG: vvu:VV1_0393 ribosomal protein L22.
 
  
 0.706
ACZ08252.1
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: wpi:WPa_1341 putative transcriptional regulator.
 
  
 0.602
ACZ08250.1
Hypothetical protein.
     
 0.540
ACZ09388.1
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: ccv:CCV52592_0372 oxygen-independent coproporphyrinogen III oxidase; Belongs to the 'phage' integrase family.
  
     0.521
ACZ09893.1
KEGG: nse:NSE_0416 putative competence protein F.
  
    0.513
ACZ09550.1
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dal:Dalk_0825 tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.491
ACZ09279.1
PFAM: Prephenate dehydrogenase; KEGG: maq:Maqu_1025 3-phosphoshikimate 1- carboxyvinyltransferase.
  
    0.467
xerC
Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
     0.464
ACZ07695.1
PFAM: protein of unknown function DUF955.
 
  
 0.458
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
  
  
 0.457
Your Current Organism:
Sebaldella termitidis
NCBI taxonomy Id: 526218
Other names: S. termitidis ATCC 33386, Sebaldella termitidis ATCC 33386, Sebaldella termitidis NCTC 11300, Sebaldella termitidis str. ATCC 33386, Sebaldella termitidis strain ATCC 33386
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