STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACZ08424.1TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: tmz:Tmz1t_0707 sigma 54 modulation protein/ribosomal protein S30EA. (106 aa)    
Predicted Functional Partners:
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
 
 
 
 0.924
rplX
Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
  
 
 
 0.921
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.920
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
   0.918
rpmA
TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: hypothetical protein; K02899 large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.917
rpsI
PFAM: ribosomal protein S9; KEGG: gme:Gmet_0607 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.917
rpmI
TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: cbc:CbuK_1189 LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family.
 
 
   0.916
rpmH
TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: smt:Smal_4045 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.916
rpmE2
TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: xfm:Xfasm12_0873 50S ribosomal protein L31.
   
 
 0.914
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
  
 
 0.914
Your Current Organism:
Sebaldella termitidis
NCBI taxonomy Id: 526218
Other names: S. termitidis ATCC 33386, Sebaldella termitidis ATCC 33386, Sebaldella termitidis NCTC 11300, Sebaldella termitidis str. ATCC 33386, Sebaldella termitidis strain ATCC 33386
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.