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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACZ08845.1Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; KEGG: yen:YE0815 transcriptional regulatory protein. (319 aa)    
Predicted Functional Partners:
ACZ08849.1
TIGRFAM: PTS system, mannose/fructose/sorbose family, IIC subunit; PFAM: phosphotransferase system PTS sorbose- specific IIC subunit; KEGG: kpe:KPK_5270 sorbose permease IIC component.
 
     0.475
ACZ08847.1
TIGRFAM: PTS system, mannose/fructose/sorbose family, IIA subunit; PFAM: PTS system fructose subfamily IIA component; KEGG: yen:YE0814 sorbose-specific PTS uptake system component.
     
 0.425
ACZ08846.1
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: kpe:KPK_5267 sorbitol-6-phosphate 2- dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.412
ACZ08848.1
KEGG: yen:YE0813 sorbose-specific PTS uptake system component; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; PFAM: PTS system sorbose subfamily IIB component.
     
 0.409
Your Current Organism:
Sebaldella termitidis
NCBI taxonomy Id: 526218
Other names: S. termitidis ATCC 33386, Sebaldella termitidis ATCC 33386, Sebaldella termitidis NCTC 11300, Sebaldella termitidis str. ATCC 33386, Sebaldella termitidis strain ATCC 33386
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