STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACZ08910.1KEGG: pfo:Pfl01_1947 hypothetical protein. (260 aa)    
Predicted Functional Partners:
ACZ07631.1
TIGRFAM: release factor H-coupled RctB family protein; PFAM: protein of unknown function UPF0027; KEGG: mxa:MXAN_1238 hypothetical protein.
 
    0.775
ACZ08237.1
PFAM: protein of unknown function UPF0027; KEGG: glo:Glov_0158 protein of unknown function UPF0027.
 
    0.775
ACZ08239.1
PFAM: protein of unknown function UPF0027; KEGG: glo:Glov_0158 protein of unknown function UPF0027.
 
    0.775
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
       0.658
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.658
ACZ08908.1
KEGG: pat:Patl_2042 hexapaptide repeat-containing transferase.
       0.658
ACZ08909.1
KEGG: gsu:GSU0647 hypothetical protein.
       0.658
ACZ06970.1
KEGG: scl:sce4731 hypothetical protein.
 
     0.651
ACZ09475.1
PFAM: band 7 protein; SMART: band 7 protein; KEGG: sde:Sde_0275 SPFH domain-containing protein/band 7 family protein.
 
  
 0.640
ACZ09483.1
PFAM: band 7 protein; SMART: band 7 protein; KEGG: mlo:mlr1172 hypothetical protein.
 
  
 0.630
Your Current Organism:
Sebaldella termitidis
NCBI taxonomy Id: 526218
Other names: S. termitidis ATCC 33386, Sebaldella termitidis ATCC 33386, Sebaldella termitidis NCTC 11300, Sebaldella termitidis str. ATCC 33386, Sebaldella termitidis strain ATCC 33386
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.