STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACZ09493.1KEGG: dps:DP0391 hypothetical protein. (207 aa)    
Predicted Functional Partners:
ACZ09492.1
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cbc:CbuK_1741 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.723
ACZ09491.1
PFAM: protein of unknown function DUF534; KEGG: vcj:VCD_003240 ABC transporter substrate- binding protein.
  
    0.697
ACZ09210.1
Periplasmic protein-like protein; KEGG: ecz:ECS88_4241 hypothetical protein.
  
     0.597
rpmA
TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: hypothetical protein; K02899 large subunit ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.424
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
   0.424
Your Current Organism:
Sebaldella termitidis
NCBI taxonomy Id: 526218
Other names: S. termitidis ATCC 33386, Sebaldella termitidis ATCC 33386, Sebaldella termitidis NCTC 11300, Sebaldella termitidis str. ATCC 33386, Sebaldella termitidis strain ATCC 33386
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