STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACZ10152.1KEGG: pca:Pcar_0934 hypothetical protein. (307 aa)    
Predicted Functional Partners:
ACZ10151.1
KEGG: pca:Pcar_0933 hypothetical protein.
     0.970
ACZ10153.1
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sil:SPO1186 TPR domain-containing protein.
     0.967
ACZ10154.1
PFAM: amino acid permease-associated region; KEGG: dps:DP0919 proton-linked D-serine/D- alanine/glycine symporter.
  
 
 0.634
ACZ09261.1
PFAM: glycosyl transferase family 2; KEGG: bcm:Bcenmc03_0849 glycosyl transferase family protein.
  
 
 0.633
ACZ09957.1
KEGG: ypi:YpsIP31758_2102 hypothetical protein.
  
 
 0.561
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.557
ACZ10155.1
TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: gur:Gura_3726 putative membrane-associated zinc metalloprotease.
  
  
 0.542
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
  
 
 0.528
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.513
ACZ10070.1
TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: xau:Xaut_2320 MIP family channel protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.504
Your Current Organism:
Sebaldella termitidis
NCBI taxonomy Id: 526218
Other names: S. termitidis ATCC 33386, Sebaldella termitidis ATCC 33386, Sebaldella termitidis NCTC 11300, Sebaldella termitidis str. ATCC 33386, Sebaldella termitidis strain ATCC 33386
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