node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACZ07988.1 | ACZ10348.1 | Sterm_1120 | Sterm_3513 | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; KEGG: dde:Dde_0152 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1999 ABC transporter related. | 0.473 |
ACZ09208.1 | ACZ10348.1 | Sterm_2355 | Sterm_3513 | PFAM: UvrD/REP helicase; KEGG: bba:Bd3339 ATP-dependent DNA helicase. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1999 ABC transporter related. | 0.640 |
ACZ09208.1 | dnaA | Sterm_2355 | Sterm_0001 | PFAM: UvrD/REP helicase; KEGG: bba:Bd3339 ATP-dependent DNA helicase. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.478 |
ACZ09208.1 | ligA | Sterm_2355 | Sterm_0592 | PFAM: UvrD/REP helicase; KEGG: bba:Bd3339 ATP-dependent DNA helicase. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | 0.779 |
ACZ09208.1 | mfd | Sterm_2355 | Sterm_0090 | PFAM: UvrD/REP helicase; KEGG: bba:Bd3339 ATP-dependent DNA helicase. | DEAD/DEAH box helicase domain protein; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.403 |
ACZ09208.1 | uvrB | Sterm_2355 | Sterm_1226 | PFAM: UvrD/REP helicase; KEGG: bba:Bd3339 ATP-dependent DNA helicase. | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.933 |
ACZ09208.1 | uvrC | Sterm_2355 | Sterm_1145 | PFAM: UvrD/REP helicase; KEGG: bba:Bd3339 ATP-dependent DNA helicase. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.792 |
ACZ10346.1 | ACZ10347.1 | Sterm_3511 | Sterm_3512 | KEGG: saz:Sama_0340 hypothetical protein. | Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mmw:Mmwyl1_0265 MarR family transcriptional regulator. | 0.503 |
ACZ10346.1 | ACZ10348.1 | Sterm_3511 | Sterm_3513 | KEGG: saz:Sama_0340 hypothetical protein. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1999 ABC transporter related. | 0.509 |
ACZ10347.1 | ACZ10346.1 | Sterm_3512 | Sterm_3511 | Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mmw:Mmwyl1_0265 MarR family transcriptional regulator. | KEGG: saz:Sama_0340 hypothetical protein. | 0.503 |
ACZ10347.1 | ACZ10348.1 | Sterm_3512 | Sterm_3513 | Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mmw:Mmwyl1_0265 MarR family transcriptional regulator. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1999 ABC transporter related. | 0.836 |
ACZ10348.1 | ACZ07988.1 | Sterm_3513 | Sterm_1120 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1999 ABC transporter related. | PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; KEGG: dde:Dde_0152 DEAD/DEAH box helicase-like; Belongs to the DEAD box helicase family. | 0.473 |
ACZ10348.1 | ACZ09208.1 | Sterm_3513 | Sterm_2355 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1999 ABC transporter related. | PFAM: UvrD/REP helicase; KEGG: bba:Bd3339 ATP-dependent DNA helicase. | 0.640 |
ACZ10348.1 | ACZ10346.1 | Sterm_3513 | Sterm_3511 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1999 ABC transporter related. | KEGG: saz:Sama_0340 hypothetical protein. | 0.509 |
ACZ10348.1 | ACZ10347.1 | Sterm_3513 | Sterm_3512 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1999 ABC transporter related. | Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mmw:Mmwyl1_0265 MarR family transcriptional regulator. | 0.836 |
ACZ10348.1 | dnaA | Sterm_3513 | Sterm_0001 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1999 ABC transporter related. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.521 |
ACZ10348.1 | ligA | Sterm_3513 | Sterm_0592 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1999 ABC transporter related. | DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | 0.484 |
ACZ10348.1 | mfd | Sterm_3513 | Sterm_0090 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1999 ABC transporter related. | DEAD/DEAH box helicase domain protein; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.836 |
ACZ10348.1 | ribBA | Sterm_3513 | Sterm_2778 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1999 ABC transporter related. | 3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.474 |
ACZ10348.1 | uvrB | Sterm_3513 | Sterm_1226 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bam:Bamb_1999 ABC transporter related. | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.984 |