STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
rhaAKEGG: sek:SSPA3617 L-rhamnose isomerase; TIGRFAM: L-rhamnose isomerase; PFAM: L-rhamnose isomerase; Belongs to the rhamnose isomerase family. (421 aa)    
Predicted Functional Partners:
ACZ10622.1
Rhamnulokinase; KEGG: tau:Tola_1043 rhamnulokinase; TIGRFAM: rhamnulokinase; PFAM: carbohydrate kinase FGGY.
 
 
 0.990
ACZ10620.1
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
 
 
 0.976
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
 
  
 0.900
ACZ10322.1
PFAM: protein of unknown function DUF718; KEGG: sgl:SG0170 hypothetical protein.
 
 
 0.786
ACZ10319.1
Hypothetical protein; KEGG: avn:Avin_09150 RhaT L-rhamnose-proton symport 2.
 
  
 0.559
ACZ10618.1
PFAM: extracellular solute-binding protein family 1; KEGG: ent:Ent638_3292 extracellular solute-binding protein.
       0.442
ACZ10617.1
PFAM: glycosyl hydrolase family 88; KEGG: eca:ECA3559 plant-inducible protein.
 
     0.438
Your Current Organism:
Sebaldella termitidis
NCBI taxonomy Id: 526218
Other names: S. termitidis ATCC 33386, Sebaldella termitidis ATCC 33386, Sebaldella termitidis NCTC 11300, Sebaldella termitidis str. ATCC 33386, Sebaldella termitidis strain ATCC 33386
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