STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACZ10767.1PFAM: OmpA/MotB domain protein; KEGG: cla:Cla_0386 outer membrane fibronectin- binding protein. (358 aa)    
Predicted Functional Partners:
ACZ07863.1
PFAM: OmpA/MotB domain protein; KEGG: smt:Smal_0800 OmpA/MotB domain protein.
  
     0.772
ACZ09128.1
SMART: Deoxyribonuclease I-like; KEGG: noc:Noc_A0008 endonuclease/exonuclease/phosphatase.
  
  
 0.568
glyS
KEGG: geo:Geob_1577 glycyl-tRNA synthetase, beta subunit; TIGRFAM: glycyl-tRNA synthetase, beta subunit.
       0.549
ACZ07455.1
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: cff:CFF8240_1760 TonB-dependent heme receptor.
  
   
 0.508
ACZ07063.1
KEGG: gsu:GSU2079 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
  
   
 0.492
ACZ08422.1
PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_0837 lipoprotein releasing system, transmembrane protein, LolC/E family.
  
 
 0.473
ACZ10900.1
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: tbd:Tbd_1532 PpiC-type peptidyl-prolyl cis- trans isomerase.
 
   
 0.471
ACZ07468.1
PFAM: NLP/P60 protein; KEGG: eca:ECA2735 putative outer membrane lipoprotein.
 
 
 0.468
ACZ10637.1
Hypothetical protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family.
 
   
 0.460
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
     
 0.458
Your Current Organism:
Sebaldella termitidis
NCBI taxonomy Id: 526218
Other names: S. termitidis ATCC 33386, Sebaldella termitidis ATCC 33386, Sebaldella termitidis NCTC 11300, Sebaldella termitidis str. ATCC 33386, Sebaldella termitidis strain ATCC 33386
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