STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACZ10902.1Ferroxidase; Iron-storage protein. (163 aa)    
Predicted Functional Partners:
ACZ10901.1
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: tdn:Suden_1582 rubredoxin-type Fe(Cys)4 protein.
  
  
 0.822
ACZ10903.1
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: abu:Abu_0880 peroxide stress regulator; Belongs to the Fur family.
     
 0.795
ACZ07970.1
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
  
 0.642
rplP
Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
   
   0.556
rpmC
TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: gsu:GSU2849 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
   
   0.525
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: dal:Dalk_4649 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
    0.524
ACZ10900.1
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: tbd:Tbd_1532 PpiC-type peptidyl-prolyl cis- trans isomerase.
     
 0.456
ACZ10122.1
PFAM: iron dependent repressor; FeoA family protein; regulatory protein MarR; SMART: iron dependent repressor; KEGG: tcx:Tcr_0904 iron dependent repressor.
 
   
 0.433
Your Current Organism:
Sebaldella termitidis
NCBI taxonomy Id: 526218
Other names: S. termitidis ATCC 33386, Sebaldella termitidis ATCC 33386, Sebaldella termitidis NCTC 11300, Sebaldella termitidis str. ATCC 33386, Sebaldella termitidis strain ATCC 33386
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