Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VDBG_00093 | VDBG_00867 | C9S8M5 | C9S7J7 | Phosphoserine aminotransferase. | Pyridoxamine 5'-phosphate oxidase. | 0.664 |
VDBG_00093 | VDBG_04773 | C9S8M5 | C9SI91 | Phosphoserine aminotransferase. | Pyridoxal kinase. | 0.541 |
VDBG_00093 | VDBG_05137 | C9S8M5 | C9SK10 | Phosphoserine aminotransferase. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.616 |
VDBG_00867 | VDBG_00093 | C9S7J7 | C9S8M5 | Pyridoxamine 5'-phosphate oxidase. | Phosphoserine aminotransferase. | 0.664 |
VDBG_00867 | VDBG_01249 | C9S7J7 | C9S678 | Pyridoxamine 5'-phosphate oxidase. | Pyridox_oxase_2 domain-containing protein. | 0.926 |
VDBG_00867 | VDBG_01569 | C9S7J7 | C9SAL2 | Pyridoxamine 5'-phosphate oxidase. | Pyridoxal phosphate homeostasis protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which may be involved in intracellular homeostatic regulation of pyridoxal 5'- phosphate (PLP), the active form of vitamin B6; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | 0.623 |
VDBG_00867 | VDBG_04680 | C9S7J7 | C9SHZ8 | Pyridoxamine 5'-phosphate oxidase. | Pyridoxal reductase. | 0.902 |
VDBG_00867 | VDBG_04773 | C9S7J7 | C9SI91 | Pyridoxamine 5'-phosphate oxidase. | Pyridoxal kinase. | 0.989 |
VDBG_00867 | VDBG_05137 | C9S7J7 | C9SK10 | Pyridoxamine 5'-phosphate oxidase. | 6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. | 0.629 |
VDBG_00867 | VDBG_06070 | C9S7J7 | C9SME6 | Pyridoxamine 5'-phosphate oxidase. | Pyridoxal reductase. | 0.902 |
VDBG_00867 | VDBG_08373 | C9S7J7 | C9STV2 | Pyridoxamine 5'-phosphate oxidase. | Pantothenate synthetase. | 0.595 |
VDBG_00867 | VDBG_09061 | C9S7J7 | C9SVY6 | Pyridoxamine 5'-phosphate oxidase. | Pyrimidine biosynthesis enzyme THI12. | 0.800 |
VDBG_00867 | VDBG_09617 | C9S7J7 | C9SWW6 | Pyridoxamine 5'-phosphate oxidase. | Pyridoxine biosynthesis protein PDX1; Belongs to the PdxS/SNZ family. | 0.931 |
VDBG_01249 | VDBG_00867 | C9S678 | C9S7J7 | Pyridox_oxase_2 domain-containing protein. | Pyridoxamine 5'-phosphate oxidase. | 0.926 |
VDBG_01249 | VDBG_04680 | C9S678 | C9SHZ8 | Pyridox_oxase_2 domain-containing protein. | Pyridoxal reductase. | 0.900 |
VDBG_01249 | VDBG_04773 | C9S678 | C9SI91 | Pyridox_oxase_2 domain-containing protein. | Pyridoxal kinase. | 0.975 |
VDBG_01249 | VDBG_06070 | C9S678 | C9SME6 | Pyridox_oxase_2 domain-containing protein. | Pyridoxal reductase. | 0.900 |
VDBG_01249 | VDBG_09061 | C9S678 | C9SVY6 | Pyridox_oxase_2 domain-containing protein. | Pyrimidine biosynthesis enzyme THI12. | 0.800 |
VDBG_01249 | VDBG_09617 | C9S678 | C9SWW6 | Pyridox_oxase_2 domain-containing protein. | Pyridoxine biosynthesis protein PDX1; Belongs to the PdxS/SNZ family. | 0.900 |
VDBG_01569 | VDBG_00867 | C9SAL2 | C9S7J7 | Pyridoxal phosphate homeostasis protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which may be involved in intracellular homeostatic regulation of pyridoxal 5'- phosphate (PLP), the active form of vitamin B6; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | Pyridoxamine 5'-phosphate oxidase. | 0.623 |
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