STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_01441Predicted protein. (92 aa)    
Predicted Functional Partners:
VDBG_03610
26S proteasome non-ATPase regulatory subunit 3.
   
 
 0.995
VDBG_05129
26S proteasome non-ATPase regulatory subunit 4.
   
 0.989
VDBG_07294
26S proteasome regulatory subunit rpn11.
   
 
 0.988
VDBG_02265
26S proteasome regulatory subunit RPN5.
    
 0.985
VDBG_08295
26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
    
 0.985
VDBG_07459
26S proteasome regulatory subunit rpn12.
   
 0.983
VDBG_03999
26S proteasome regulatory subunit rpn-8.
   
 0.981
VDBG_07100
26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
    
 0.975
VDBG_04905
26S protease regulatory subunit 7; Belongs to the AAA ATPase family.
   
 0.974
VDBG_03629
26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.
   
 0.973
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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